這篇“clusterProfiler的GO與KEGG功能有哪些”文章的知識點大部分人都不太理解，所以小編給大家總結了以下內容，內容詳細，步驟清晰，具有一定的借鑒價值，希望大家閱讀完這篇文章能有所收獲，下面我們一起來看看這篇“clusterProfiler的GO與KEGG功能有哪些”文章吧。
支持的20個模式物種列表如下：
| Package | Maintainer | Title | Index |
| org.Hs.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Human | 3 |
| org.Mm.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Mouse | 5 |
| org.Rn.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Rat | 19 |
| org.Sc.sgd.db | Bioconductor Package Maintainer | Genome wide annotation for Yeast | 28 |
| org.Dm.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Fly | 31 |
| org.At.tair.db | Bioconductor Package Maintainer | Genome wide annotation for Arabidopsis | 32 |
| org.Dr.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Zebrafish | 37 |
| org.Ce.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Worm | 44 |
| org.Bt.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Bovine | 53 |
| org.Gg.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Chicken | 56 |
| org.Cf.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Canine | 61 |
| org.Ss.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Pig | 64 |
| org.Mmu.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Rhesus | 70 |
| org.EcK12.eg.db | Bioconductor Package Maintainer | Genome wide annotation for E coli strain K12 | 76 |
| org.Xl.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Xenopus | 111 |
| org.Ag.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Anopheles | 114 |
| org.Pt.eg.db | Bioconductor Package Maintainer | Genome wide annotation for Chimp | 121 |
| org.Pf.plasmo.db | Bioconductor Package Maintainer | Genome wide annotation for Malaria | 132 |
| org.EcSakai.eg.db | Bioconductor Package Maintainer | Genome wide annotation for E coli strain Sakai | 137 |
| org.Mxanthus.db | Eduardo Illueca Fernández | Genome wide annotation for Myxococcus xanthus DK 1622 | 944 |
簡單總結clusterProfiler包進行GO、KEGG的富集分析方法，結果輸出及內置的圖形展示。
#安裝富集分析需要的包
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("enrichplot")
BiocManager::install("GSEABase")
BiocManager::install("pathview")
BiocManager::install("clusterProfiler")
#20個模式物種注釋文件：https://www.億速云.com/article/1244
BiocManager::install("org.Hs.eg.db")
#非模式物種需要的包
BiocManager::install("AnnotationHub")
BiocManager::install("biomaRt")
#######加載必要的包#####################################################
library(clusterProfiler)
library(pathview)
library(GSEABase)
library(enrichplot)
#模式物種
library(AnnotationHub)
library(biomaRt)
############################################################以上就是關于“clusterProfiler的GO與KEGG功能有哪些”這篇文章的內容，相信大家都有了一定的了解，希望小編分享的內容對大家有幫助，若想了解更多相關的知識內容，請關注億速云行業資訊頻道。
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